BDG LifeSciences is a distinguished bioinformatics company established in 2010 and operates globally. Headquartered in India the company specializes in facilitating workshops, training programs, novel & innovative research projects, and online courses in technologies of bioinformatics & life science. The company is registered under the Ministry of MSME (Micro, Small, and Medium Enterprises), Government of India, with the registration number UDYAM-UP-01-0019151. Recently, BDG Lifesciences, India has authorized BBR Group Pty Ltd., Australia (ACN 608 550 849), to operate its programs in Australia & New Zealand.
With a focus on practical application of technology, where participants work on their own computer/laptop on software/servers, BDG LifeSciences has been a leader in the sector for the last 14 years. Since its inception, BDG LifeSciences has successfully educated a diverse range of participants globally, including students, scientists, faculty members, professors, and corporate executives.
We have launched our 10-day Online Technical Training in Python for Genomics. It will be an extensive 10-day training program in which every day 60 minutes interactive training sessions will be conducted to give the user a unique learning experience. VIDEO RECORDING WILL BE PROVIDED. On successful completion of the course participation certificate will be awarded.
As it is 100% hands-on training program participants will run the processes on their own computer systems having Windows/ Mac/ Linux with a unique learning experience. The program will be of great help to students/ researchers/ faculty/ pathologists/ scientists in learning this latest technology.
WHY THIS COURSE IS IMPORTANT?
This course is designed to provide participants with a comprehensive understanding of both basic and advanced Linux commands and their application in bioinformatics. It progresses to Python programming, focusing on data handling, bioinformatics file formats, and tools. Participants will also explore Python libraries like Pandas and BioPython, and dive into bioinformatics workflows for analyzing biological datasets such as RNA-seq. The goal is to build the foundational and practical knowledge necessary to handle real-world biological data efficiently..
SCHEDULE
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DAY
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MODULE NAME
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TOPICS
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1
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Module 1: Basic Linux commands
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- Intro to the command line
- Linux file system
- Viewing and editing files
- basic commands: man, echo, ls, pwd, mkdir, rmdir, mv, cp, open, touch, cat, find, tail, wc, clear, diff
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2
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Module 2: Advance Linux commands
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- Use of vim, grep, less, cut, join, sort, sed, awk command
- Use of samtools, bedtools commands
- Using the above commands to handle the biological data
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3
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Module 3: Introduction to Python
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- Introduction to Programming
- Setting up Python environment
- Python syntax
- Python Data Structures
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4
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Module 4: Working with Data
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- Operations in Python
- The for loop and the if statement
- Lists, dictionaries & Tuples
- Functions, methods and modules
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5
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Module 5: Practical python
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- Reading & Writing Files
- Traversing the file system
- Working with Web & APIs
- Writing command-line applications
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6
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Module 6: Introduction to Pandas
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- Introduction to Dataframe
- Selecting & Indexing
- Handling Missing Values
- Transformations: Sort, Filter, Group By & Pivot
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7
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Module 7: Handling Bioinformatics file formats
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- Bioinformatics File Formats and Tools
- Extract GSE data from NCBI database
- GEOparse
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8
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Module 8: Python for Biology
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- Introduction to BioPython
- Introduction to PySam
- Working with VCF files
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9
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Module9: Advanced Bioinformtics workflows
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- Differential Expression Analysis of RNA-seq Data
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10
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Module 8: Introduction to Data Analysis and Visualization
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- Data visualization
- Visualizing Genomic Data
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SYSTEM REQUIREMENT: Any OS (Windows/Mac/Ubuntu) with internet connection
PRE-REQUISITES: Mobaxterm if using windows operating system.
LEARNING OUTCOMES: What will I learn? After this course, you should be able to:
- Linux Mastery: Proficiency in using both basic and advanced Linux commands to handle bioinformatics data efficiently.
- Python for Bioinformatics: Understanding Python syntax, data structures, file operations, and its applications in biology through libraries like Biopython and Pandas.
- Bioinformatics Tools: Practical skills in handling bioinformatics file formats such as FASTA, VCF, and tools like SAMtools, BEDtools, and GEOparse.
- Data Analysis & Visualization: Expertise in performing RNA-seq data analysis and visualizing results using Python plotting libraries.
- Automation: Building Python command-line applications to automate bioinformatics workflows.
TARGET AUDIENCE
Student: Bachelor, Masters, PhD, MBBS, MD students as well as Faculty and Professors from Microbiology, Biochemistry, Biotechnology, Immunology, Medicine, Pharmacy, Pharmaceutical Chemistry, Biomedical Technology, Genetics, Bioinformatics, Plant Science and Life Sciences.
Professionals: Resident Doctors, Biotechnology, Bioinformatics, Medicine and Pharmaceutical scientists from industry, academia, and regulatory agencies. Hands-on exercises will be performed individually using software tools on your own laptops. (no prior experience required).
RESOURCE PERSON
Ashish Kumar Choudhary, a Technical Associate at BDG Lifesciences and a graduate of the Indian Institute of Technology (IIT) Bombay, specializes in bioinformatics, sequencing data analysis, and computational biology. With expertise in scRNA-Seq, spatial transcriptomics, RNA-Seq, and DNA-Seq, Ashish excels in building optimized pipelines and solving complex problems using R, Python, and C programming. His academic and professional experiences, including hands-on research at the National Centre for Microbial Resource in Pune, reflect his strong foundation in genomics, next-generation sequencing, and metagenomics. Dedicated to leveraging genomics data for biomedical advancements, Ashish conducts impactful workshops, training sessions, and research projects aimed at addressing challenges in precision medicine.
REGISTRATION STEPS:
- Click on register tab.
- This will take you to this link- https://events.humanitix.com/bdg-lifesciences-training-programs/tickets
- You will see the Training Programs and their fee, scroll down to see the list of all available training programs.
- For the training which you want to register, click 1 for 1 participant, 2 for 2 participants and so on and then click Continue.
- Fill in the required attendee information and proceed to payment.
- Complete the payment process, and you will receive your registration/ticket via email.
T & C
- After registering, please email to info@bdglifesciences.com with your preferred start date and choose one of the following time slots: 6:30 AM–8:00 AM India time or 9:30 PM–11:00 PM India time.
- Kindly note that the time of the sessions will be 60-90 minutes everyday.
- Once you register, please allow us 2-5 working days to make your training schedule, i.e. dates and time.
- Please provide a GMAIL ID for registration as the recorded video session will be provided on YouTube. Kindly provide that email ID by which you use YouTube.
- Since the training is a one-on-one live session with a trainer on Zoom, you'll need to attend, allowing for practical hands-on learning, real-time explanations, and direct query resolution for a better learning experience.
- At the end of each session, you will receive a video recording, allowing you to review the steps as many times as needed to enhance your learning and master the topics and tasks.
- BDG Lifesceiences (OPC) Private Limited is registered under Ministry of MSME(Micro, Small and Medium Enterprises), Government of India with Registration Number:UDYAM-UP-01-0019151 hence the certificate will be provided of it. BBR Group Pty Ltd, Australia (ACN-Australian Company Number-608 550 849) has the franchisee of BDG Lifesciences to run its programs in Australia & New Zealand.
- The certificate will be issued as per the details which you will provide in the registration form while registering before payment.
- We want to make sure that you learn properly hence the training certificate will be given ONLY on successful completion of all the tasks given by the trainer.
- The certificates of all our Online programs are sent by email(softcopy) which has a unique barcode. You can take a print of that on heavy cardstock or photo paper and get it laminated if required.
- The registration is NON-REFUNDABLE and NON-TRANSFERABLE.
- BDG Lifesciences (OPC) Pvt. Ltd., India and BBR Group Pty Ltd Australia reserves the right of admission in all our programs.
- If you are removed or your registration is canceled then there will be no answer to that. We have our own reasons for such an act of ours. If we do not wish to give this workshop to any participant then we will refund their amount.
- To view the pictures of our previous events click here-1 and click here-2. To view, the listing of upcoming events kindly click here and our previous workshops can be viewed here. To view the video feedback of our previous events kindly visit our YouTube Channel
- You should also read the Terms & Conditions page as well as the FAQs page. For any assistance kindly chat with our AI Assistant BioBot on the website www.bdglifesciences.com
